PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 365aa    MW: 38813.5 Da    PI: 7.6363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006971.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-052322691254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Do006971.1 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 269
                 677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.036220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-6230274No hitNo description
SuperFamilySSF474592.36E-10230278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-8234278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADEWWSSAA RTDDGASACS TVRATTDQDA AESAATSATS TDYFRPSLHG DAAASSTSFL  60
ADPPHMDWTH AYMGGRAAAA EATTGFNALL QLHGDAGRRF LLDQPGVVDG AALVAPAAAS  120
QGASLYAGNQ YSSYGDAVPA APMTKPFSQQ QFSGTFGSST RNFSGMPPSV PPMTTKPLLL  180
KALEHKAFKS HKEPVLDACS SATRRNVPDS PAAAAKKPRI ATPSPLPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLH EAIEYIRFLH DQVAVIAQSV LLELMNRPLQ SLSSPYLRCG  300
RPVQVQQLQQ QQFSPSYQAK AGDGGEAKED LRSRGLCLVP VASTYAVASE TAPEFWHPTL  360
GGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695463e-68BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961600.11e-164PREDICTED: transcription factor bHLH112-like
TrEMBLK3Z7M81e-164K3Z7M8_SETIT; Uncharacterized protein
STRINGSi022548m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-45bHLH family protein